This is a simple fix: go to Document > SmartType, choose Characters and click Rebuild. Repeat the Rebuild command for the Locations list. The SmartType lists -- and the reports, which are derived from the SmartType lists -- will be updated to match exactly what's working in the script.
While you have the SmartType lists open, review all of the categories to see if there are entries on any of them that should not be there (such as a misspelled character name or a location named SMASH CUT TO). Delete any erroneous list items.